Currently, the bottleneck of proteomics research has shifted from the output of the experimental data to the in-depth analysis of the huge amount data. The development of large-scale, high-throughput and automated mass spectrometry data analysis platforms to process, storage, manage and share the mass spectrometer data resources has become one of the most hot topics.

    Herein, we build a system called Proteome View for mass spectrometry data analysis, management and display. The proteomics pipeline is designed to:
1. Carry out an automated, comprehensive, standardized analysis of proteomics data through all its various stages;
2. Capture and store the information needed to fully describe the results, how they were obtained, validate their significance, and permit the analysis to be repeated if necessary.

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